Publications

  1. Panchiwala, Hemil, Shalin Shah, Hannes Planatscher, Mykola Zakharchuk, Matthias König, and Andreas Dräger. 2022. “The Systems Biology Simulation Core Library.” Bioinformatics 38 (3): 864–65.
  2. Schmidt, Felix F, Dajana Lichtenstein, Hannes Planatscher, Almut Mentz, Joern Kalinowski, Andreas E Steinhilber, Thomas O Joos, Albert Braeuning, and Oliver Pötz. 2021. “Pesticide Mixture Effects on Liver Protein Abundance in HepaRG Cells.” Toxicology 458: 152839.
  3. Lichtenstein, Dajana, Almut Mentz, Heike Sprenger, Felix F Schmidt, Stefan P Albaum, Joern Kalinowski, Hannes Planatscher, Thomas O Joos, Oliver Poetz, and Albert Braeuning. 2021. “A Targeted Transcriptomics Approach for the Determination of Mixture Effects of Pesticides.” Toxicology 460: 152892.
  4. Anselm, Viktoria, Cornelia Sommersdorf, Montserrat Carrasco-Triguero, Paula Katavolos, Hannes Planatscher, Andreas Steinhilber, Thomas Joos, and Oliver Poetz. 2021. “Matrix and Sampling Effects on Quantification of Protein Biomarkers of Drug-Induced Liver Injury.” Journal of Proteome Research 20 (11): 4985–94.
  5. Schmidt, Felix, Hannes Planatscher, Dajana Lichtenstein, Almut Mentz, Joern Kalinowski, Thomas Joos, Albert Braeuning, and Oliver Poetz. 2020. “DETERMINATION OF ADDITIVE, SYNERGISTIC AND ANTAGONISTIC EFFECTS BY THE ANALYSES OF PROTEIN MARKERS IN PESTICIDE MIXTURE-TREATED HEPARG-CELLS.” Drug Metabolism and Pharmacokinetics 35 (1).
  6. Braeuning, Albert, Almut Mentz, Felix F Schmidt, Stefan P Albaum, Hannes Planatscher, Jörn Kalinowski, Thomas O Joos, Oliver Poetz, and Dajana Lichtenstein. 2020. “RNA-Protein Correlation of Liver Toxicity Markers in HepaRG Cells.” EXCLI Journal 19: 135.
  7. Hammer, Helen, Flavia Schmidt, Tanja Heise, Constanze Knebel, Alexander Dabrowski, Hannes Planatscher, Carsten Kneuer, Philip Marx-Stoelting, and Oliver Pötz. 2020. “Induction and Repression Effects on CYP and Transporter Protein Abundance by Azole Mixture Uptake in Rat Liver.” EXCLI Journal 19: 904.
  8. Naboulsi, W, H Planatscher, J-C Gautier, X Zhou, T Joos, and O Poetz. 2019. “Applying Immunoaffinity-Proteomics to Validate and Identify Drug-Induced Kidney Injury Biomarkers in Cynomolgus Monkey’s Urine.” In TOXICOLOGY LETTERS, 314:S266–S266.
  9. Anselm, V, C Sommersdorf, A Steinhilber, W Naboulsi, F Schmidt, H Hammer, A Tausch, H Planatscher, T Joos, and O Poetz. 2019. “Development of MS-Based Immunoassays for Quantification of Drug-Induced Liver Injury Candidate Biomarkers across Species.” In TOXICOLOGY LETTERS, 314:S195–S195.
  10. Steinhilber, Andreas E, Felix F Schmidt, Wael Naboulsi, Hannes Planatscher, Alicia Niedzwiecka, Jutta Zagon, Albert Braeuning, Alfonso Lampen, Thomas O Joos, and Oliver Poetz. 2019. “Application of Mass Spectrometry-Based Immunoassays for the Species-and Tissue-Specific Quantification of Banned Processed Animal Proteins in Feeds.” Analytical Chemistry 91 (6): 3902–11.
  11. Anselm, V, W Naboulsi, A Steinhilber, H Planatscher, T Joos, and O Poetz. 2019. “Quantifying Protein Biomarkers for Drug-Induced Organ Injury across the Species Barrier.” In NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, 392:S57–S58.
  12. Weiß, Frederik, Helen S Hammer, Kathrin Klein, Hannes Planatscher, Ulrich M Zanger, Agneta Norén, Christine Wegler, Per Artursson, Thomas O Joos, and Oliver Poetz. 2018. “Direct Quantification of Cytochromes P450 and Drug Transporters—a Rapid, Targeted Mass Spectrometry-Based Immunoassay Panel for Tissues and Cell Culture Lysates.” Drug Metabolism and Disposition 46 (4): 387–96.
  13. Steinhilber, Andreas E, Felix F Schmidt, Wael Naboulsi, Hannes Planatscher, Alicia Niedzwiecka, Jutta Zagon, Albert Braeuning, Alfonso Lampen, Thomas O Joos, and Oliver Poetz. 2018. “Species Differentiation and Quantification of Processed Animal Proteins and Blood Products in Fish Feed Using an 8-Plex Mass Spectrometry-Based Immunoassay.” Journal of Agricultural and Food Chemistry 66 (39): 10327–35.
  14. Steinhilber, Andreas E., Felix F. Schmidt, Wael Naboulsi, Hannes Planatscher, Alicia Niedzwiecka, Jutta Zagon, Albert Braeuning, Alfonso Lampen, Thomas O. Joos, and Oliver Poetz. 2018. “Mass Spectrometry-Based Immunoassay for the Quantification of Banned Ruminant Processed Animal Proteins in Vegetal Feeds.” Analytical Chemistry. https://doi.org/10.1021/acs.analchem.8b00120.
  15. Weiss, Frederik, Helen Hammer, Felix Schmidt, Hannes Planatscher, Cornelia Sommersdorf, Thomas O Joos, and Oliver Poetz. 2018. “Rapid and Versatile Ms-Based Immunoassays for Targeted Cytochrome P450 and Transporter Profiling in Tissue and Cell Culture Lysates.” Drug Metabolism and Pharmacokinetics 33 (1): S24–S25.
  16. Pötz, Oliver, and Hannes Planatscher. 2018. “Abschlussbericht Zum Projekt:“ XIM-Cross-Spezies Immunoassays Für Eine Effizientere Medikamentenentwicklung“: Laufzeit Des Vorhabens: 01.04. 2013-30.06. 2017, Berichtszeitraum: 01.04. 2013-30.06. 2017.” NMI Naturwissenschaftliches und Medizinisches Institut an der Universität~….
  17. Naboulsi, Wael, Hannes Planatscher, Manisha Sonee, Yafei Chen, Stewart Bryant, Charlie Johnson, Leslie Nguyen, et al. 2018. “A Classical and an Immunoaffinity-Proteomic Study to Identify and Validate Drug-Induced Kidney Injury Biomarker in Canine.” In Poster Presented at Society of Toxicology Annual Meeting, San Antonio (TX). Accessed May, 16:2018.
  18. Filomena, Angela, Anna Guenther, Hannes Planatscher, Francois Topin, Joseph She, Luca Formichella, Laurent Terradot, et al. 2017. “Performance of a Multiplex Serological Helicobacter Pylori Assay on a Novel Microfluidic Assay Platform.” Proteomes 5 (4): 24.
  19. Berg, B van den, H Planatscher, X Zhou, J-C Gautier, T O Joos, and O Poetz. 2016. “Of Mice (Rats, Cats, Dogs, Monkey) and Men-How to Measure Kidney Biomarkers across Species.” In NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, 389:48.
  20. Planatscher, Hannes. 2016. “Combinatorial Optimization for Affinity Proteomics.” Eberhard Karls Universität Tübingen.
  21. Weiß, Frederik, Anke Schnabel, Hannes Planatscher, Bart H J van den Berg, Bettina Serschnitzki, Andreas K Nuessler, Wolfgang E Thasler, et al. 2015. “Indirect Protein Quantification of Drug-Transforming Enzymes Using Peptide Group-Specific Immunoaffinity Enrichment and Mass Spectrometry.” Scientific Reports 5 (1): 1–7.
  22. Hammer, Helen S, Bart H J van den Berg, Frederik Weiss, Hannes Planatscher, Thomas O Joos, and Oliver Poetz. 2014. “Quantification of Transporters in the Liver via Ms-Based Immunoassays.” In NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, 387:S47–S47.
  23. Weiß, Frederik, Bart H J van den Berg, Hannes Planatscher, Christopher J Pynn, Thomas O Joos, Oliver Poetz, Frederik Weiß, et al. 2014. “Catch and Measure-Mass Spectrometry-Based Immunoassays in Biomarker Research.” Biochimica et Biophysica Acta 1844 (5): 927–32. https://doi.org/10.1016/j.bbapap.2013.09.010.
  24. Planatscher, Hannes, Frederik Weiß, David Eisen, B H J van den Berg, Andreas Zell, Thomas Joos, and Oliver Poetz. 2014. “Identification of Short Terminal Motifs Enriched by Antibodies Using Peptide Mass Fingerprinting.” Bioinformatics (Oxford, England) 30 (9): 1–9. https://doi.org/10.1093/bioinformatics/btu009.
  25. Planatscher, Hannes, Oliver Poetz, Dieter Stoll, Markus F Templin, and Thomas O Joos. 2013. “Combinatorial Optimization for Short-Epitope Immunoassays.” In EURO INFORMS 26th European Conference On Operational Research Abstract Book, 226.
  26. Andreas Dräger and Hannes Planatscher. Encyclopedia of Systems Biology, chapter Parameter Estimation, Metabolic Network Modeling (2013)
  27.  Andreas Dräger and Hannes Planatscher. Encyclopedia of Systems Biology, chapter Metabolic Networks (2013)
  28. Heubach, Yvonne, Hannes Planatscher, Cornelia Sommersdorf, Daniel Maisch, Julia Maier, Thomas O. Joos, Markus F. Templin, and Oliver Poetz. 2013. “From Spots to Beads-PTM-Peptide Bead Arrays for the Characterization of Anti-Histone Antibodies.” Proteomics 13 (6): 1010–15. https://doi.org/10.1002/pmic.201200383.
  29. Eisen, David, Hannes Planatscher, Darryl B. Hardie, Udo Kraushaar, Christopher J. Pynn, Dieter Stoll, Christoph Borchers, Thomas O. Joos, and Oliver Poetz. 2013. “G Protein-Coupled Receptor Quantification Using Peptide Group-Specific Enrichment Combined with Internal Peptide Standard Reporter Calibration.” Journal of Proteomics 90: 85–95. https://doi.org/10.1016/j.jprot.2013.02.017.
  30. Planatscher, Hannes, Stefanie Rimmele, Gerd Michel, Oliver Pötz, Thomas Joos, Nicole Schneiderhan-Marra, Oliver Potz, Thomas Joos, Nicole Schneiderhan-Marra, and Oliver Pötz. 2013. “Systematic Reference Sample Generation for Multiplexed Serological Assays.” Sci. Rep. 3 (November): 3259. https://doi.org/10.1038/srep03259.
  31. Volk, S., Thomas D. Schreiber, David Eisen, Calvin Wiese, Hannes Planatscher, Christophe J. Pynn, Dieter Stoll, et al. 2012. “Combining Ultracentrifugation and Peptide Termini Group-Specific Immunoprecipitation for Multiplex Plasma Protein Analysis.” Molecular & Cellular Proteomics 11 (7): O111 015438. https://doi.org/10.1074/mcp.O111.015438.
  32. Matheis, Katja, David Laurie, Christiane Andriamandroso, Nadir Arber, Lina Badimon, Xavier Benain, Kaïdre Bendjama, et al. 2011. “A Generic Operational Strategy to Qualify Translational Safety Biomarkers.” Drug Discovery Today 16 (13–14): 600–608.
  33. Hoeppe, Sibylle, Thomas D Schreiber, Hannes Planatscher, Andreas Zell, Markus F Templin, Dieter Stoll, Thomas O Joos, and Oliver Poetz. 2011. “Targeting Peptide Termini, a Novel Immunoaffinity Approach to Reduce Complexity in Mass Spectrometric Protein Identification.” Molecular Cellular Proteomics MCP 10 (2): M110.002857. https://doi.org/10.1074/mcp.M110.002857.
  34. Hoeppe, S, T D Schreiber, H Planatscher, A Zell, M F Templin, D Stoll, T O Joos, and O Poetz. 2010. “Targeting Peptide Termini – a Novel Immunoaffinity Approach to Reduce Complexity in Mass Spectrometric Protein Identification.” Mol Cell Proteomics. https://doi.org/M110.002857 [pii] 10.1074/mcp.M110.002857.
  35. Jahn, Andreas, H Planatscher, Georg Hinselmann, Nikolas Fechner, and A Zell. 2010. “Automatic Pharmacophore Model Generation Using Weighted Substructure Assignments.” Journal of Cheminformatics 2 (Suppl 1): P42. http://www.jcheminf.com/content/2/S1/P42.
  36. Joos, T, M Templin, D Stoll, O Poetz, A Zell, H Planatscher, and J Supper. 2010. A method for determining in silico- a set of selected target epitopes. WO2010094300A1, issued 2010. https://www.google.com/patents/WO2010094300A1?cl=en.
  37. Planatscher, Hannes, Jochen Supper, Oliver Poetz, Dieter Stoll, Thomas Joos, Markus F Templin, and Andreas Zell. 2010. “Optimal Selection of Epitopes for TXP-Immunoaffinity Mass Spectrometry.” Algorithms for Molecular Biology: AMB 5 (1): 28. https://doi.org/10.1186/1748-7188-5-28.
  38. Kronfeld, Marcel, Hannes Planatscher, and Andreas Zell. 2010. “The EvA2 Optimization Framework.” In Learning and Intelligent Optimization Conference Special Session on Software for Optimization LIONSWOP, 247–50. Springer. http://www.springerlink.com/index/Q234272704425731.pdf.
  39. Dräger, Andreas, Marcel Kronfeld, Michael J Ziller, Jochen Supper, Hannes Planatscher, Jørgen B Magnus, Marco Oldiges, Oliver Kohlbacher, and Andreas Zell. 2009. “Modeling the Valine and Leucine Metabolism in Corynebacterium Glutamicum – Additional File 2.”
  40. Dräger, Andreas, Hannes Planatscher, Dieudonné Motsou Wouamba, Adrian Schröder, Michael Hucka, Lukas Endler, Martin Golebiewski, et al. 2009. “A T X : Conversion of SBML Files into Human-Readable Reports.” Systems Biology, 1–2.
  41. Supper, Jochen, Lucía Spangenberg, Hannes Planatscher, Andreas Dräger, Adrian Schröder, and Andreas Zell. 2009. “BowTieBuilder: Modeling Signal Transduction Pathways.” BMC Systems Biology 3 (1): 67. https://doi.org/10.1186/1752-0509-3-67.
  42. Dräger, Andreas, Marcel Kronfeld, Michael J Ziller, Jochen Supper, Hannes Planatscher, Jørgen B Magnus, Marco Oldiges, Oliver Kohlbacher, and Andreas Zell. 2009. “Modeling Metabolic Networks in C. Glutamicum: A Comparison of Rate Laws in Combination with Various Parameter Optimization Strategies.” BMC Systems Biology 3 (1): 5. https://doi.org/10.1186/1752-0509-3-5.
  43. Dräger, Andreas, Hannes Planatscher, Dieudonné Motsou Wouamba, Adrian Schröder, Michael Hucka, Lukas Endler, Martin Golebiewski, Wolfgang Müller, and Andreas Zell. 2009. “SBML2LaTEX: Conversion of SBML Files into Human-Readable Reports.” Bioinformatics 25 (11): 1455–56. https://doi.org/10.1093/bioinformatics/btp170.
  44. Drager, A, M Kronfeld, J Supper, H Planatscher, J B Magnus, M Oldiges, and A Zell. 2007. “Benchmarking Evolutionary Algorithms on Convenience Kinetics Models of the Valine and Leucine Biosynthesis in C. Glutamicum.” Evolutionary Computation 2007 CEC 2007 IEEE Congress On, 896–903. https://doi.org/10.1109/CEC.2007.4424565.
  45. Drager, Andreas, Jochen Supper, Hannes Planatscher, J B Magnus, Marco Oldiges, Andreas Zell, Jorgen B Magnus, et al. 2007. “Comparing Various Evolutionary Algorithms on the Parameter Optimization of the Valine and Leucine Biosynthesis in Corynebacterium Glutamicum.” 2007 IEEE Congress on Evolutionary Computation, 896–903. https://doi.org/10.1109/CEC.2007.4424528.
  46. Streichert, Felix, Hannes Planatscher, Christian Spieth, Holger Ulmer, and Andreas Zell. 2004. “Comparing Genetic Programming and Evolution Strategies on Inferring Gene Regulatory Networks.” Edited by Kalyanmoy Deb, Riccardo Poli, Wolfgang Banzhaf, Hans-Georg Beyer, Edmund Burke, Paul Darwen, Dipankar Dasgupta, et al. Genetic and Evolutionary Computation GECCO2004 Part I, Lecture Notes in Computer Science, 3102: 471–80. http://link.springer.de/link/service/series/0558/bibs/3102/31020471.htm.